HAMAP rule MF_01307
General rule information
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| Accession | MF_01307 |
| Dates | 3-DEC-2002 (Created)
22-SEP-2023 (Last updated, Version 38) |
| Name | Ribosomal_uS5 |
| Scope(s) |
Bacteria Archaea Plastid |
| Template(s) | P02357 (RS5_GEOSE); P21467 (RS5_BACSU); P0A7W1 (RS5_ECOLI); P0A7W4 (RS5_SALTY); Q5SHQ5 (RS5_THET8); [ Recover all ] |
| Triggered by |
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01307_B (Get profile general information and statistics) end case
case c? <OC:Archaea>
HAMAP; MF_01307_A (Get profile general information and statistics) end case
|
Propagated annotation
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Identifier, protein and gene names
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| case <OC:Bacteria> and not <OC:Cyanobacteriota> | |
| Identifier | RS5 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS5; |
| Gene name | Name=rpsE; |
| else case <OC:Cyanobacteriota> | |
| Identifier | RS5 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS5; |
| Gene name | Name=rpsE; Synonyms=rps5; |
| else case <OC:Archaea> | |
| Identifier | RS5 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS5; |
| Gene name | Name=rps5; |
| else case <OG:Chloroplast> | |
| Identifier | RR5 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS5c; |
| Gene name | Name=rps5; |
| end case | |
Comments
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| FUNCTION | With S4 and S12 plays an important role in translational accuracy. |
| case <OC:Bacteria> | |
| FUNCTION | Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. |
| SUBUNIT | Part of the 30S ribosomal subunit. Contacts proteins S4 and S8. |
| else case <OC:Archaea> | |
| SUBUNIT | Part of the 30S ribosomal subunit. Contacts protein S4. |
| else case <OG:Chloroplast> | |
| SUBUNIT | Part of the 30S ribosomal subunit. Contacts protein S4. |
| SUBCELLULAR LOCATION | Plastid, chloroplast. |
| end case | |
| DOMAIN | The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity. |
| SIMILARITY | Belongs to the universal ribosomal protein uS5 family. |
Keywords
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Gene Ontology
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| GO:0019843; Molecular function:rRNA binding | |
| GO:0006412; Biological process:translation | |
| case <OG:Chloroplast> | |
| GO:0009507; Cellular component:chloroplast | |
| end case | |
Cross-references
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| Pfam | PF00333; Ribosomal_S5; 1; |
| Pfam | PF03719; Ribosomal_S5_C; 1; |
| NCBIfam | TIGR01021; RpsE_bact; 1; |
| NCBIfam | TIGR01020; RpsE_arch; 1; |
| PROSITE | PS00585; RIBOSOMAL_S5; 1; |
| PROSITE | PS50881; S5_DSRBD; 1; |
Features
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Additional information
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| Size range | 197-236 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: None |
| Comments | CARRP and CENSY are fairly different, made atypical. |