HAMAP rule MF_01326
General rule information
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| Accession | MF_01326 |
| Dates | 8-MAR-2004 (Created)
22-SEP-2023 (Last updated, Version 31) |
| Name | Ribosomal_uL24 |
| Scope(s) |
Bacteria Archaea Plastid |
| Template(s) | P60624 (RL24_ECOLI); Q9RXJ1 (RL24_DEIRA); Q5SHP9 (RL24_THET8); P10972 (RL24_HALMA); [ Recover all ] |
| Triggered by |
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01326_B (Get profile general information and statistics) end case
case c? <OC:Archaea>
HAMAP; MF_01326_A (Get profile general information and statistics) end case
|
Propagated annotation
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Identifier, protein and gene names
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| case <OC:Bacteria> and not <OC:Cyanobacteriota> | |
| Identifier | RL24 |
| Protein name | RecName: Full=Large ribosomal subunit protein uL24; |
| Gene name | Name=rplX; |
| else case <OC:Cyanobacteriota> | |
| Identifier | RL24 |
| Protein name | RecName: Full=Large ribosomal subunit protein uL24; |
| Gene name | Name=rplX; Synonyms=rpl24; |
| else case <OC:Archaea> | |
| Identifier | RL24 |
| Protein name | RecName: Full=Large ribosomal subunit protein uL24; |
| Gene name | Name=rpl24; |
| else case <OG:Chloroplast> | |
| Identifier | RK24 |
| Protein name | RecName: Full=Large ribosomal subunit protein uL24c; |
| Gene name | Name=rpl24; |
| end case | |
Comments
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| FUNCTION | One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. |
| case <OC:Bacteria> | |
| FUNCTION | One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. |
| SUBUNIT | Part of the 50S ribosomal subunit. |
| else case <OC:Archaea> | |
| FUNCTION | Located at the polypeptide exit tunnel on the outside of the subunit. |
| SUBUNIT | Part of the 50S ribosomal subunit. |
| else case <OG:Chloroplast> | |
| SUBUNIT | Part of the 50S ribosomal subunit. |
| SUBCELLULAR LOCATION | Plastid, chloroplast. |
| end case | |
| SIMILARITY | Belongs to the universal ribosomal protein uL24 family. |
Keywords
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Gene Ontology
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| GO:0019843; Molecular function:rRNA binding | |
| GO:0006412; Biological process:translation | |
| case <OG:Chloroplast> | |
| GO:0009507; Cellular component:chloroplast | |
| end case | |
Cross-references
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| Pfam | PF00467; KOW; 1; |
| NCBIfam | TIGR01079; RplX_bact; 1; |
| NCBIfam | TIGR01080; RplX_A_E; 1; |
| PROSITE | PS01108; RIBOSOMAL_L24; 1; |
Features
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Additional information
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| Size range | 111-168 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: <Unknown> |
| Comments | ONYPE, THEAC and THEVO have a short protein that is considered to be atypical and is not used in the seed alignment. ACHLI is C- terminally fused to an unknown domain. |