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HAMAP rule MF_01328

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General rule information [?]

Accession MF_01328
Dates 29-MAR-2004 (Created)
17-FEB-2023 (Last updated, Version 31)
Name Ribosomal_L4
Scope
Bacteria
Archaea
Plastid
Templates P60723 (RL4_ECOLI); Q9RXK1 (RL4_DEIRA); P12735 (RL4_HALMA); Q5SHN9 (RL4_THET8): [Recover all]
case <OC:Bacteria> or <OG:Chloroplast>
Triggered by
end case

case <OC:Archaea>
Triggered by
end case


Propagated annotation [?]


Identifier, protein and gene names [?]

case <OC:Bacteria> and not <OC:Cyanobacteriota>
Identifier
RL4
Protein name
RecName: Full=50S ribosomal protein L4;
Gene name
rplD
else case <OC:Cyanobacteriota>
Identifier
RL4
Protein name
RecName: Full=50S ribosomal protein L4;
Gene name
rplD, rpl4
else case <OC:Archaea>
Identifier
RL4
Protein name
RecName: Full=50S ribosomal protein L4;
Gene name
rpl4
else case <OG:Chloroplast>
Identifier
RK4
Protein name
RecName: Full=50S ribosomal protein L4, chloroplastic;
Gene name
rpl4
end case

Comments [?]

case not <OG:Chloroplast>
Function One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
Forms part of the polypeptide exit tunnel.
Subunit Part of the 50S ribosomal subunit.
else case <OG:Chloroplast>
Function Probably binds the 23S rRNA.
Subunit Part of the 50S ribosomal subunit.
Subcellular location Plastid, chloroplast.
end case
Similarity Belongs to the universal ribosomal protein uL4 family.

Keywords [?]

Ribonucleoprotein
Ribosomal protein
RNA-binding
rRNA-binding

Gene Ontology [?]

GO:0019843; Molecular function: rRNA binding.
GO:0006412; Biological process: translation.
case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case

Cross-references [?]

Pfam PF00573; Ribosomal_L4; 1;
TIGRFAMs TIGR03953; rplD_bact; 1;
TIGR03672; rpl4p_arch; 1;
case <OC:Archaea>
PROSITE PS00939; RIBOSOMAL_L1E; 1;
end case

Additional information [?]

case <OC:Bacteria>
Size range 199-293 amino acids
end case
case <OC:Archaea>
Size range 246-283 amino acids
end case
Related rules None
Fusion Nter: None; Cter: <Unknown>
Comments Fused with unknown domains in CUTAK, SYNJA, SYNJB


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