HAMAP rule MF_01348
General rule information
[?]
| Accession | MF_01348 |
| Dates | 23-MAY-2006 (Created) 17-FEB-2023 (Last updated, Version 17) |
| Name | Ycf48 |
| Scope | Bacteria; Cyanobacteriota
Plastid |
| Templates | P73069 (YCF48_SYNY3); Q8DI95 (YCF48_THEVB); O82660 (P2SAF_ARATH); M1VJU3 (P2SAF_CYAM1): [Recover all] |
| Triggered by |
Propagated annotation
[?]
Identifier, protein and gene names
[?]
case <OC:Cyanobacteriota> and <Feature:PS51257>
| Identifier |
|
| Protein name |
|
||||
| Gene name |
|
else
| Identifier |
|
| Protein name |
|
||||
| Gene name |
|
end case
case <OG:Chloroplast>
| Identifier |
|
| Protein name |
|
||||||||||||
| Gene name |
|
end case
Comments
[?]
case <OC:Cyanobacteriota>
| Function | A factor required for optimal assembly of photosystem II (PSII), acting in the early stages of PSII assembly. Also plays a role in replacement of photodamaged D1 (psbA). Assists YidC in synthesis of chlorophyll-binding proteins. |
end case
case <OC:Gloeobacter>
| Subunit | Part of early PSII assembly complexes which includes D1 (psbA) and PsbI; not found in mature PSII. Binds to the periplasmic side of PSII complexes. Interacts with YidC. |
| Subcellular location | Cell inner membrane; Lipid-anchor; Periplasmic side. Note=Associated with a PSII precusor complex on the periplasmic side of the cell inner membrane. |
else case <OC:Cyanobacteriota> and <Feature:PS51257>
| Subunit | Part of early PSII assembly complexes which includes D1 (psbA) and PsbI; not found in mature PSII. Binds to the lumenal side of PSII complexes. Interacts with YidC. |
| Subcellular location | Cellular thylakoid membrane; Lipid-anchor; Lumenal side. Note=Associated with a PSII precusor complex on the lumenal side of the thylakoid membrane. |
else
| Subcellular location | Cellular thylakoid lumen. Note=Associated with a PSII precusor complex on the lumenal side of the thylakoid membrane. |
end case
case <OG:Chloroplast>
| Function | Essential for photosystem II (PSII) biogenesis; required for assembly of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559. |
| Subcellular location | Plastid, chloroplast thylakoid lumen. |
end case
| Domain | A 7-bladed beta-propeller torus, about 55 by 55 Angstroms, with a depth of about 25 Angstroms and a central pore. |
| Similarity | Belongs to the Ycf48 family. |
Keywords
[?]
case <OC:Gloeobacter>
else
end case
Gene Ontology
[?]
case <OG:Chloroplast>
GO:0009543; Cellular component: chloroplast thylakoid lumen.
else case <OC:Gloeobacter> and <Feature:PS51257>
GO:0005886; Cellular component: plasma membrane.
else
GO:0031977; Cellular component: thylakoid lumen.
end case
Cross-references
[?]
Computed features
[?]
case not <Feature:PS51257>
| General | Signal; -; 1; trigger=yes; |
end case
Additional information
[?]
| Size range | 323-416 amino acids |
| Related rules | None |
| Fusion | None |
| Comments | Has an unusual lipobox in some cyanobacteria. |