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HAMAP rule MF_01399

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General rule information [?]

Accession MF_01399
Dates 9-MAR-2009 (Created)
17-FEB-2023 (Last updated, Version 20)
Name ATP_synth_bprime
Scope
Bacteria; Cyanobacteriota
Plastid
Templates P12410 (ATPF2_NOSS1); O05332 (ATPF2_RHOCA): [Recover all]
Triggered by

Propagated annotation [?]


Identifier, protein and gene names [?]

Identifier
ATPF2
case <OC:Cyanobacteriota>
Protein name
RecName: Full=ATP synthase subunit b';
AltName: Full=ATP synthase F(0) sector subunit b';
AltName: Full=ATPase subunit II;
AltName: Full=F-type ATPase subunit b';
Short=F-ATPase subunit b';
else case <OG:Chloroplast>
Protein name
RecName: Full=ATP synthase subunit b', chloroplastic;
AltName: Full=ATP synthase F(0) sector subunit b';
AltName: Full=ATPase subunit II;
end case
Gene name
atpF2, atpG

Comments [?]

Function F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). The b'-subunit is a diverged and duplicated form of b found in plants and photosynthetic bacteria.
Subunit F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has four main subunits: a(1), b(1), b'(1) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta, b and b' chains.
case <OG:Chloroplast>
Subcellular location Plastid, chloroplast thylakoid membrane; Single-pass membrane protein.
else case <OC:Cyanobacteriota> and not <OC:Gloeobacter>
Subcellular location Cellular thylakoid membrane; Single-pass membrane protein.
else case <OC:Gloeobacter>
Subcellular location Cell inner membrane; Single-pass membrane protein.
else case not defined <Property:Membrane> or <Property:Membrane=1>
Subcellular location Cell membrane; Single-pass membrane protein.
else case <Property:Membrane=2>
Subcellular location Cell inner membrane; Single-pass membrane protein.
end case
case <OG:Chloroplast>
Miscellaneous In plastids the F-type ATPase is also known as CF(1)CF(0).
end case
Similarity Belongs to the ATPase B chain family.

Keywords [?]

ATP synthesis
CF(0)
Hydrogen ion transport
Ion transport
Membrane
Transmembrane
Transport
case <OG:Chloroplast> or <OC:Cyanobacteriota> and not <OC:Gloeobacter>
Thylakoid
else case <OC:Gloeobacter>
Cell membrane
Cell inner membrane
else case not defined <Property:Membrane> or <Property:Membrane=1>
Cell membrane
else case <Property:Membrane=2>
Cell membrane
Cell inner membrane
end case
Transmembrane helix

Gene Ontology [?]

GO:0046933; Molecular function: proton-transporting ATP synthase activity, rotational mechanism.
case <OC:Cyanobacteriota> and not <OC:Gloeobacter>
GO:0042651; Cellular component: thylakoid membrane.
else case <OG:Chloroplast>
GO:0009535; Cellular component: chloroplast thylakoid membrane.
else
GO:0015986; Biological process: proton motive force-driven ATP synthesis.
GO:0005886; Cellular component: plasma membrane.
end case

Cross-references [?]

Pfam PF00430; ATP-synt_B; 1;

Computed features [?]

General Transmembrane; -; 1; trigger=yes;

Additional information [?]

Size range 138-207 amino acids
Related rules MF_01398 (ATPF)
Fusion None
Comments Restricted to cyanobacteria and chloroplasts. In order to decrease confusion with the non-cyanobacterial atpG (gamma) subunit this has been renamed to ATPF2 and given the gene name atpF2. The historical gene name atpG is kept as a synonym.


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