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Annotation rule MF_02122 |
Accession | MF_02122 |
Dates | 2-AUG-2011 (Created) 21-JAN-2020 (Last updated, Version 8) |
Name | DapD_type2 |
Scope | Bacteria; Actinobacteria
Bacteria; Proteobacteria |
Template | P9WP21 (DAPD_MYCTU) |
Triggered by |
Identifier |
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Protein name |
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Gene name |
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Function | Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA. |
Catalytic activity | RHEA:17325: (S)-2,3,4,5-tetrahydrodipicolinate + H2O + succinyl-CoA = (S)-2-succinylamino-6-oxoheptanedioate + CoA
EC 2.3.1.117 |
Pathway | Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate (succinylase route): step 1/3. |
Subunit | Homotrimer. |
Subcellular location | Cytoplasm. |
Similarity | Belongs to the type 2 tetrahydrodipicolinate N-succinyltransferase family. |
From: DAPD_MYCTU (P9WP21) | ||||||||||||
Key | From | To | Description | Tag | Condition | FTGroup | ||||||
ACT_SITE | 199 | 199 | Acyl-anhydride intermediate | E | ||||||||
REGION | 257 | 258 | Succinyl-CoA binding | [ED]-[AGS] | ||||||||
REGION | 290 | 293 | Succinyl-CoA binding | R-[RQ]-x-S | ||||||||
METAL (Optional) | 166 | 166 | Magnesium 1; shared with trimeric partners | D | ||||||||
METAL (Optional) | 183 | 183 | Magnesium 2; shared with trimeric partners | E | ||||||||
BINDING | 201 | 201 | Succinyl-CoA | R | ||||||||
BINDING | 216 | 216 | Succinyl-CoA; via amide nitrogen | [GA] | ||||||||
BINDING | 219 | 219 | Succinyl-CoA | S | ||||||||
BINDING | 242 | 242 | Succinyl-CoA; via amide nitrogen | A | ||||||||
BINDING | 265 | 265 | Succinyl-CoA; via carbonyl oxygen | G | ||||||||
BINDING | 277 | 277 | Succinyl-CoA | K |
Size range | 297-401 amino acids |
Related rules | None |
Fusion | None |
Comments | There is another family of DapD (see MF_00811). |