HAMAP rule MF_00010
General rule information
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| Accession | MF_00010 |
| Dates | 1-JUN-2001 (Created)
28-NOV-2023 (Last updated, Version 49) |
| Name | UPF0060 |
| Scope(s) |
Bacteria Archaea Methanosarcinales |
| Template(s) | P76169 (YNFA_ECOLI); [ Recover all ] |
| Triggered by |
HAMAP; MF_00010 (Get profile general information and statistics) |
Propagated annotation
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Identifier, protein and gene names
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| case <OC:Escherichia> or <OC:Shigella> or <OC:Salmonella> | |
| Identifier | YNFA |
| Protein name | RecName: Full=UPF0060 membrane protein YnfA; |
| Gene name | Name=ynfA; |
| else | |
| Identifier | Ynnn |
| Protein name | RecName: Full=UPF0060 membrane protein |
| end case | |
Comments
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| case not defined <Property:Membrane> or <Property:Membrane=1> | |
| SUBCELLULAR LOCATION | Cell membrane; Multi-pass membrane protein. |
| else case <Property:Membrane=2> | |
| SUBCELLULAR LOCATION | Cell inner membrane; Multi-pass membrane protein. |
| end case | |
| SIMILARITY | Belongs to the UPF0060 family. |
Keywords
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| case defined <Property:Membrane> and <Property:Membrane=2> | |
| Cell inner membrane | |
| end case | |
| Cell membrane | |
| Membrane | |
| Transmembrane | |
| Transmembrane helix | |
Gene Ontology
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| GO:0005886; Cellular component:plasma membrane |
Cross-references
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| Pfam | PF02694; UPF0060; 1; |
| General | Transmembrane; -; 3-4; |
Features
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| From: YNFA_ECOLI (P76169) | ||||||||||||
| Key | From | To | Description | Tag | Condition | FTGroup | ||||||
| case <OC:Escherichia> or <OC:Shigella> or <OC:Salmonella> | ||||||||||||
| TOPO_DOM | Nter | 5 | /note="Periplasmic" | |||||||||
| TRANSMEM | 6 | 26 | /note="Helical" | |||||||||
| TOPO_DOM | 27 | 30 | /note="Cytoplasmic" | |||||||||
| TRANSMEM | 31 | 51 | /note="Helical" | |||||||||
| TOPO_DOM | 52 | 60 | /note="Periplasmic" | |||||||||
| TRANSMEM | 61 | 81 | /note="Helical" | |||||||||
| TOPO_DOM | 82 | 84 | /note="Cytoplasmic" | |||||||||
| TRANSMEM | 85 | 105 | /note="Helical" | |||||||||
| TOPO_DOM | 106 | Cter | /note="Periplasmic" | |||||||||
| end case | ||||||||||||
Additional information
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| Size range | 101-122 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: None |