HAMAP rule MF_00010
General rule information
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| Accession | MF_00010 |
| Dates | 1-JUN-2001 (Created) 20-NOV-2019 (Last updated, Version 48) |
| Name | UPF0060 |
| Scope | Bacteria
Archaea; Methanosarcinales |
| Template | P76169 (YNFA_ECOLI) |
| Triggered by |
Propagated annotation
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Identifier, protein and gene names
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case <OC:Escherichia> or <OC:Shigella> or <OC:Salmonella>
| Identifier |
|
| Protein name |
|
||||
| Gene name |
|
else
| Identifier |
|
| Protein name |
|
||||
end case
Comments
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case not defined <Property:Membrane> or <Property:Membrane=1>
| Subcellular location | Cell membrane; Multi-pass membrane protein. |
else case <Property:Membrane=2>
| Subcellular location | Cell inner membrane; Multi-pass membrane protein. |
end case
| Similarity | Belongs to the UPF0060 family. |
Keywords
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case defined <Property:Membrane> and <Property:Membrane=2>
end case
Gene Ontology
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GO:0005886; Cellular component: plasma membrane.
Cross-references
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| Pfam | PF02694; UPF0060; 1; |
Computed features
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case not <OC:Escherichia> and not <OC:Shigella> and not <OC:Salmonella>
| General | Transmembrane; -; 3-4; trigger=yes; |
end case
Features
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case <OC:Escherichia> or <OC:Shigella> or <OC:Salmonella>
| From: YNFA_ECOLI (P76169) | ||||||||||||
| Key | From | To | Description | Tag | Condition | FTGroup | ||||||
| TOPO_DOM | Nter | 5 | Periplasmic | |||||||||
| TRANSMEM | 6 | 26 | Helical | |||||||||
| TOPO_DOM | 27 | 30 | Cytoplasmic | |||||||||
| TRANSMEM | 31 | 51 | Helical | |||||||||
| TOPO_DOM | 52 | 60 | Periplasmic | |||||||||
| TRANSMEM | 61 | 81 | Helical | |||||||||
| TOPO_DOM | 82 | 84 | Cytoplasmic | |||||||||
| TRANSMEM | 85 | 105 | Helical | |||||||||
| TOPO_DOM | 106 | Cter | Periplasmic | |||||||||
end case
Additional information
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| Size range | 101-122 amino acids |
| Related rules | None |
| Fusion | None |