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HAMAP rule MF_00010

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General rule information [?]

Accession MF_00010
Dates 1-JUN-2001 (Created)
20-NOV-2019 (Last updated, Version 48)
Name UPF0060
Scope(s) Bacteria
Archaea
Methanosarcinales
Template(s) P76169 (YNFA_ECOLI); [ Recover all ]
Triggered by HAMAP; MF_00010 (Get profile general information and statistics)

Propagated annotation [?]

Identifier, protein and gene names [?]

case <OC:Escherichia> or <OC:Shigella> or <OC:Salmonella>
Identifier YNFA
Protein name RecName: Full=UPF0060 membrane protein YnfA;
Gene name Name=ynfA;
else
Identifier Ynnn
Protein name RecName: Full=UPF0060 membrane protein ;
end case

Comments [?]

case not defined <Property:Membrane> or <Property:Membrane=1>
SUBCELLULAR LOCATIONCell membrane; Multi-pass membrane protein.
else case <Property:Membrane=2>
SUBCELLULAR LOCATIONCell inner membrane; Multi-pass membrane protein.
end case
SIMILARITYBelongs to the UPF0060 family.

Keywords [?]

case defined <Property:Membrane> and <Property:Membrane=2>
Cell inner membrane
end case
Cell membrane
Membrane
Transmembrane
Transmembrane helix

Gene Ontology [?]

GO:0005886; Cellular component:plasma membrane

Cross-references [?]

Pfam PF02694; UPF0060; 1;
General Transmembrane; -; 3-4;

Features [?]

From: YNFA_ECOLI (P76169)
Key From To Description Tag Condition FTGroup
case <OC:Escherichia> or <OC:Shigella> or <OC:Salmonella>
TOPO_DOM Nter 5 /note="Periplasmic"
TRANSMEM 6 26 /note="Helical"
TOPO_DOM 27 30 /note="Cytoplasmic"
TRANSMEM 31 51 /note="Helical"
TOPO_DOM 52 60 /note="Periplasmic"
TRANSMEM 61 81 /note="Helical"
TOPO_DOM 82 84 /note="Cytoplasmic"
TRANSMEM 85 105 /note="Helical"
TOPO_DOM 106 Cter /note="Periplasmic"
end case

Additional information [?]

Size range 101-122 amino acids
Related rules None
Fusion Nter: None Cter: None



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