HAMAP rule MF_00010
General rule information
[?]
Accession | MF_00010 |
Dates | 1-JUN-2001 (Created)
28-NOV-2023 (Last updated, Version 49) |
Name | UPF0060 |
Scope(s) |
Bacteria Archaea Methanosarcinales |
Template(s) | P76169 (YNFA_ECOLI); [ Recover all ] |
Triggered by |
HAMAP; MF_00010 (Get profile general information and statistics) |
Propagated annotation
[?]
Identifier, protein and gene names
[?]
case <OC:Escherichia> or <OC:Shigella> or <OC:Salmonella> | |
Identifier | YNFA |
Protein name | RecName: Full=UPF0060 membrane protein YnfA; |
Gene name | Name=ynfA; |
else | |
Identifier | Ynnn |
Protein name | RecName: Full=UPF0060 membrane protein |
end case |
Comments
[?]
case not defined <Property:Membrane> or <Property:Membrane=1> | |
SUBCELLULAR LOCATION | Cell membrane; Multi-pass membrane protein. |
else case <Property:Membrane=2> | |
SUBCELLULAR LOCATION | Cell inner membrane; Multi-pass membrane protein. |
end case | |
SIMILARITY | Belongs to the UPF0060 family. |
Keywords
[?]
case defined <Property:Membrane> and <Property:Membrane=2> | |
Cell inner membrane | |
end case | |
Cell membrane | |
Membrane | |
Transmembrane | |
Transmembrane helix |
Gene Ontology
[?]
GO:0005886; Cellular component:plasma membrane |
Cross-references
[?]
Pfam | PF02694; UPF0060; 1; |
General | Transmembrane; -; 3-4; |
Features
[?]
From: YNFA_ECOLI (P76169) | ||||||||||||
Key | From | To | Description | Tag | Condition | FTGroup | ||||||
case <OC:Escherichia> or <OC:Shigella> or <OC:Salmonella> | ||||||||||||
TOPO_DOM | Nter | 5 | /note="Periplasmic" | |||||||||
TRANSMEM | 6 | 26 | /note="Helical" | |||||||||
TOPO_DOM | 27 | 30 | /note="Cytoplasmic" | |||||||||
TRANSMEM | 31 | 51 | /note="Helical" | |||||||||
TOPO_DOM | 52 | 60 | /note="Periplasmic" | |||||||||
TRANSMEM | 61 | 81 | /note="Helical" | |||||||||
TOPO_DOM | 82 | 84 | /note="Cytoplasmic" | |||||||||
TRANSMEM | 85 | 105 | /note="Helical" | |||||||||
TOPO_DOM | 106 | Cter | /note="Periplasmic" | |||||||||
end case |
Additional information
[?]
Size range | 101-122 amino acids |
Related rules |
None |
Fusion | Nter: None Cter: None |