HAMAP rule MF_00373
General rule information
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| PURL | https://purl.expasy.org/hamap/rule/MF_00373 |
| Accession | MF_00373 |
| Dates | 28-FEB-2005 (Created)
03-NOV-2025 (Last updated, Version ) |
| Name | Ribosomal_bL28 |
| Scope(s) |
Bacteria Plastid |
| Template(s) | P60494; P0DV54; [ Recover all ] |
| Triggered by |
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_00373 (Get profile general information and statistics) end case
|
Propagated annotation
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Identifier, protein and gene names
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| case <OC:Bacteria> and not <OC:Cyanobacteriota> | |
| Identifier | RL28 |
| Protein name | RecName: Full=Large ribosomal subunit protein bL28; |
| Gene name | Name=rpmB; |
| else case <OC:Cyanobacteriota> | |
| Identifier | RL28 |
| Protein name | RecName: Full=Large ribosomal subunit protein bL28; |
| Gene name | Name=rpmB; Synonyms=rpl28; |
| else case <OG:Chloroplast> | |
| Identifier | RK28 |
| Protein name | RecName: Full=Large ribosomal subunit protein bL28c; |
| Gene name | Name=rpl28; |
| end case | |
Comments
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| case <FTGroup:1> | |
| COFACTOR | Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Note=Binds 1 Zn(2+) ion per subunit.; |
| end case | |
| SUBUNIT | Part of the 50S ribosomal subunit. |
| case <OG:Chloroplast> | |
| SUBCELLULAR LOCATION | Plastid, chloroplast. |
| end case | |
| SIMILARITY | Belongs to the bacterial ribosomal protein bL28 family. |
Keywords
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| Ribonucleoprotein | |
| Ribosomal protein | |
| RNA-binding | |
| rRNA-binding | |
| case <FTGroup:1> | |
| Zinc | |
| Metal-binding | |
| end case | |
Gene Ontology
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| GO:0019843; Molecular function:rRNA binding | |
| GO:0006412; Biological process:translation | |
| case <OG:Chloroplast> | |
| GO:0009507; Cellular component:chloroplast | |
| end case | |
| case <FTGroup:1> | |
| GO:0008270; Molecular function:zinc ion binding | |
| end case | |
Cross-references
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Features
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| From: RL28C_MYCTU (P0DV54) | ||||||||||||
| Key | From | To | Description | Tag | Condition | FTGroup | ||||||
| BINDING | 5 | 5 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" |
C | 1 | |||||||
| BINDING | 8 | 8 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" |
C | 1 | |||||||
| BINDING | 52 | 52 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" |
C | 1 | |||||||
| BINDING | 55 | 55 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" |
[CH] | 1 | |||||||
Additional information
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| Size range | 60-103 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: None |
| Comments | As suggested in Ban et al., (2014, PMID 24524803), capital letters directly following protein names are used to distinguish different isoforms of the same protein. |