HAMAP rule MF_00382
General rule information
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| Accession | MF_00382 |
| Dates | 1-JUN-2001 (Created)
21-SEP-2023 (Last updated, Version 39) |
| Name | Ribosomal_bL20 |
| Scope(s) |
Bacteria Plastid |
| Template(s) | P0A7L3 (RL20_ECOLI); Q9RSW7 (RL20_DEIRA); [ Recover all ] |
| Triggered by |
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_00382 (Get profile general information and statistics) end case
|
Propagated annotation
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Identifier, protein and gene names
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| case <OC:Bacteria> and not <OC:Cyanobacteriota> | |
| Identifier | RL20 |
| Protein name | RecName: Full=Large ribosomal subunit protein bL20; |
| Gene name | Name=rplT; |
| else case <OC:Cyanobacteriota> | |
| Identifier | RL20 |
| Protein name | RecName: Full=Large ribosomal subunit protein bL20; |
| Gene name | Name=rplT; Synonyms=rpl20; |
| else case <OG:Chloroplast> | |
| Identifier | RK20 |
| Protein name | RecName: Full=Large ribosomal subunit protein bL20c; |
| Gene name | Name=rpl20; |
| end case | |
Comments
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| FUNCTION | Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. |
| case <OG:Chloroplast> | |
| SUBCELLULAR LOCATION | Plastid, chloroplast. |
| end case | |
| SIMILARITY | Belongs to the bacterial ribosomal protein bL20 family. |
Keywords
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Gene Ontology
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| GO:0019843; Molecular function:rRNA binding | |
| GO:0000027; Biological process:ribosomal large subunit assembly | |
| case <OG:Chloroplast> | |
| GO:0009507; Cellular component:chloroplast | |
| end case | |
Cross-references
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| Pfam | PF00453; Ribosomal_L20; 1; |
| PRINTS | PR00062; RIBOSOMALL20; 1; |
| NCBIfam | TIGR01032; RplT_bact; 1; |
| PROSITE | PS00937; RIBOSOMAL_L20; 1; |
Features
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Additional information
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| Size range | 110-139 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: <Unknown> |
| Comments | Fused with an unknown domain in PAEAT, ARTS2 and OENOB. AYWBP and ONYPE have an internal insert not taken into account in size range. CARRP is below the threshold and considered atypical. |