HAMAP rule MF_00740
General rule information
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Accession | MF_00740 |
Dates | 26-NOV-2003 (Created)
1-JUN-2023 (Last updated, Version 29) |
Name | Phosphopentomut |
Scope(s) |
Bacteria |
Template(s) | P0A6K6 (DEOB_ECOLI); [ Recover all ] |
Triggered by |
HAMAP; MF_00740 (Get profile general information and statistics) |
Propagated annotation
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Identifier, protein and gene names
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Identifier | DEOB |
Protein name | RecName: Full=Phosphopentomutase; EC=5.4.2.7; AltName: Full=Phosphodeoxyribomutase; |
Gene name | Name=deoB; |
Comments
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FUNCTION | Phosphotransfer between the C1 and C5 carbon atoms of pentose. |
CATALYTIC ACTIVITY | Reaction=alpha-D-ribose 1-phosphate = D-ribose 5-phosphate; Xref=Rhea:RHEA:18793, ChEBI:CHEBI:57720, ChEBI:CHEBI:78346; EC=5.4.2.7; |
CATALYTIC ACTIVITY | Reaction=2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-D-ribose 5- phosphate; Xref=Rhea:RHEA:27658, ChEBI:CHEBI:57259, ChEBI:CHEBI:62877; |
PATHWAY | Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route II): step 1/3. |
COFACTOR | Name=Mn(2+); Xref=ChEBI:CHEBI:29035; Note=Binds 1 or 2 manganese ions.; |
SUBCELLULAR LOCATION | Cytoplasm. |
SIMILARITY | Belongs to the phosphopentomutase family. |
Keywords
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case <FT:6> | |
Acetylation | |
end case | |
Cytoplasm | |
Isomerase | |
case <FTGroup:1> | |
Metal-binding | |
Manganese | |
end case |
Gene Ontology
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GO:0030145; Molecular function:manganese ion binding |
GO:0008973; Molecular function:phosphopentomutase activity |
GO:0009264; Biological process:deoxyribonucleotide catabolic process |
GO:0009166; Biological process:nucleotide catabolic process |
GO:0005737; Cellular component:cytoplasm |
Cross-references
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Features
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From: DEOB_ECOLI (P0A6K6) | ||||||||||||
Key | From | To | Description | Tag | Condition | FTGroup | ||||||
BINDING | 10 | 10 | /ligand="Mn(2+)" /ligand_id="ChEBI:CHEBI:29035" |
D | 1 | |||||||
BINDING | 311 | 311 | /ligand="Mn(2+)" /ligand_id="ChEBI:CHEBI:29035" |
H | 1 | |||||||
BINDING | 347 | 347 | /ligand="Mn(2+)" /ligand_id="ChEBI:CHEBI:29035" |
D | 1 | |||||||
BINDING | 348 | 348 | /ligand="Mn(2+)" /ligand_id="ChEBI:CHEBI:29035" |
H | 1 | |||||||
BINDING | 359 | 359 | /ligand="Mn(2+)" /ligand_id="ChEBI:CHEBI:29035" |
H | 1 | |||||||
case <OC:Escherichia> or <OC:Shigella> | ||||||||||||
MOD_RES | 287 | 287 | /note="N6-acetyllysine" | K | ||||||||
end case |
Additional information
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Size range | 388-418 amino acids |
Related rules |
None |
Fusion | Nter: None Cter: None |