HAMAP rule MF_01310
General rule information
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| Accession | MF_01310 |
| Dates | 26-FEB-2003 (Created)
22-SEP-2023 (Last updated, Version 36) |
| Name | Ribosomal_uS11 |
| Scope(s) |
Bacteria Archaea Plastid |
| Template(s) | P0A7R9 (RS11_ECOLI); P80376 (RS11_THET8); [ Recover all ] |
| Triggered by |
case c? <OC:Bacteria> or <OC:Archaea> or <OG:Chloroplast>
HAMAP; MF_01310 (Get profile general information and statistics) end case
|
Propagated annotation
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Identifier, protein and gene names
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| case <OC:Bacteria> and not <OC:Cyanobacteriota> | |
| Identifier | RS11 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS11; |
| Gene name | Name=rpsK; |
| else case <OC:Cyanobacteriota> | |
| Identifier | RS11 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS11; |
| Gene name | Name=rpsK; Synonyms=rps11; |
| else case <OC:Archaea> | |
| Identifier | RS11 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS11; |
| Gene name | Name=rps11; |
| else case <OG:Chloroplast> | |
| Identifier | RR11 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS11c; |
| Gene name | Name=rps11; |
| end case | |
Comments
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| case <OC:Bacteria> | |
| FUNCTION | Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome. |
| SUBUNIT | Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3. |
| end case | |
| case <OC:Archaea> | |
| FUNCTION | Located on the platform of the 30S subunit. |
| SUBUNIT | Part of the 30S ribosomal subunit. |
| end case | |
| case <OG:Chloroplast> | |
| SUBUNIT | Part of the 30S ribosomal subunit. |
| SUBCELLULAR LOCATION | Plastid, chloroplast. |
| end case | |
| SIMILARITY | Belongs to the universal ribosomal protein uS11 family. |
Keywords
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Gene Ontology
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| GO:0019843; Molecular function:rRNA binding | |
| GO:0006412; Biological process:translation | |
| case <OG:Chloroplast> | |
| GO:0009507; Cellular component:chloroplast | |
| end case | |
Cross-references
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| Pfam | PF00411; Ribosomal_S11; 1; |
| PROSITE | PS00054; RIBOSOMAL_S11; 1; |
| PIRSF | PIRSF002131; Ribosomal_S11; 1; |
| NCBIfam | TIGR03628; Arch_S11P; 1; |
| NCBIfam | TIGR03632; Bact_S11; 1; |
Features
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Additional information
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| Size range | 124-156 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: None |