Home  |  Contact
Annotation rule MF_01315
Send feedback

General rule information [?]

Accession MF_01315
Dates 16-JUN-2003 (Created)
19-NOV-2019 (Last updated, Version 30)
Name Ribosomal_S13_S18
Scope
Bacteria
Archaea
Plastid
Templates P0A7S9 (RS13_ECOLI); P15757 (RS13_GEOSE); P80377 (RS13_THET8): [Recover all]
case <OC:Bacteria> or <OC:Archaea> or <OG:Chloroplast>
Triggered by
end case


Propagated annotation [?]


Identifier, protein and gene names [?]

case <OC:Bacteria> and not <OC:Cyanobacteria>
Identifier
RS13
Protein name
RecName: Full=30S ribosomal protein S13;
Gene name
rpsM
else case <OC:Cyanobacteria>
Identifier
RS13
Protein name
RecName: Full=30S ribosomal protein S13;
Gene name
rpsM, rps13
else case <OC:Archaea>
Identifier
RS13
Protein name
RecName: Full=30S ribosomal protein S13;
Gene name
rps13
else case <OG:Chloroplast>
Identifier
RR13
Protein name
RecName: Full=30S ribosomal protein S13, chloroplastic;
Gene name
rps13
end case

Comments [?]

case <OC:Bacteria>
Function Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.
Subunit Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.
else case <OC:Archaea>
Function Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement.
Subunit Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.
else case <OG:Chloroplast>
Function Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA.
Subunit Part of the 30S ribosomal subunit.
Subcellular location Plastid, chloroplast.
end case
Similarity Belongs to the universal ribosomal protein uS13 family.

Keywords [?]

Ribonucleoprotein
Ribosomal protein
RNA-binding
rRNA-binding
case <OC:Bacteria>
tRNA-binding
end case

Gene Ontology [?]

GO:0019843; Molecular function: rRNA binding.
case <OC:Bacteria>
GO:0000049; Molecular function: tRNA binding.
end case
GO:0006412; Biological process: translation.
case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case

Cross-references [?]

Pfam PF00416; Ribosomal_S13; 1;
TIGRFAMs TIGR03631; bact_S13; 1;
TIGR03629; arch_S13P; 1;
PROSITE PS00646; RIBOSOMAL_S13_1; 1;
PS50159; RIBOSOMAL_S13_2; 1;

Additional information [?]

case <OC:Bacteria>
Size range 115-137 amino acids
end case
case <OC:Archaea>
Size range 146-227 amino acids
end case
Related rules None
Fusion None


View rule in raw text format (no links)