HAMAP rule MF_01315
General rule information
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| Accession | MF_01315 |
| Dates | 16-JUN-2003 (Created)
22-SEP-2023 (Last updated, Version 34) |
| Name | Ribosomal_uS13 |
| Scope(s) |
Bacteria Archaea Plastid |
| Template(s) | P0A7S9 (RS13_ECOLI); P15757 (RS13_GEOSE); P80377 (RS13_THET8); [ Recover all ] |
| Triggered by |
case c? <OC:Bacteria> or <OC:Archaea> or <OG:Chloroplast>
HAMAP; MF_01315 (Get profile general information and statistics) end case
|
Propagated annotation
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Identifier, protein and gene names
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| case <OC:Bacteria> and not <OC:Cyanobacteriota> | |
| Identifier | RS13 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS13; |
| Gene name | Name=rpsM; |
| else case <OC:Cyanobacteriota> | |
| Identifier | RS13 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS13; |
| Gene name | Name=rpsM; Synonyms=rps13; |
| else case <OC:Archaea> | |
| Identifier | RS13 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS13; |
| Gene name | Name=rps13; |
| else case <OG:Chloroplast> | |
| Identifier | RR13 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS13c; |
| Gene name | Name=rps13; |
| end case | |
Comments
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| case <OC:Bacteria> | |
| FUNCTION | Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. |
| SUBUNIT | Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome. |
| else case <OC:Archaea> | |
| FUNCTION | Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. |
| SUBUNIT | Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome. |
| else case <OG:Chloroplast> | |
| FUNCTION | Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. |
| SUBUNIT | Part of the 30S ribosomal subunit. |
| SUBCELLULAR LOCATION | Plastid, chloroplast. |
| end case | |
| SIMILARITY | Belongs to the universal ribosomal protein uS13 family. |
Keywords
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| Ribonucleoprotein | |
| Ribosomal protein | |
| RNA-binding | |
| rRNA-binding | |
| case <OC:Bacteria> | |
| tRNA-binding | |
| end case | |
Gene Ontology
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| GO:0019843; Molecular function:rRNA binding | |
| case <OCellular component:Bacteria> | |
| GO:0000049; Molecular function:tRNA binding | |
| end case | |
| GO:0006412; Biological process:translation | |
| case <OG:Chloroplast> | |
| GO:0009507; Cellular component:chloroplast | |
| end case | |
Cross-references
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| Pfam | PF00416; Ribosomal_S13; 1; |
| NCBIfam | TIGR03631; bact_S13; 1; |
| NCBIfam | TIGR03629; arch_S13P; 1; |
| PROSITE | PS00646; RIBOSOMAL_S13_1; 1; |
| PROSITE | PS50159; RIBOSOMAL_S13_2; 1; |
Features
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Additional information
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| Size range | 146-227 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: None |