HAMAP rule MF_01342
General rule information
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| Accession | MF_01342 |
| Dates | 24-NOV-2005 (Created)
22-SEP-2023 (Last updated, Version 23) |
| Name | Ribosomal_uL16 |
| Scope(s) |
Bacteria Plastid |
| Template(s) | Q9RXJ5 (RL16_DEIRA); P0ADY7 (RL16_ECOLI); P60489 (RL16_THET8); [ Recover all ] |
| Triggered by |
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01342 (Get profile general information and statistics) end case
|
Propagated annotation
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Identifier, protein and gene names
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| case <OC:Bacteria> and not <OC:Cyanobacteriota> | |
| Identifier | RL16 |
| Protein name | RecName: Full=Large ribosomal subunit protein uL16; |
| Gene name | Name=rplP; |
| else case <OC:Cyanobacteriota> | |
| Identifier | RL16 |
| Protein name | RecName: Full=Large ribosomal subunit protein uL16; |
| Gene name | Name=rplP; Synonyms=rpl16; |
| else case <OG:Chloroplast> | |
| Identifier | RK16 |
| Protein name | RecName: Full=Large ribosomal subunit protein uL16c; |
| Gene name | Name=rpl16; |
| end case | |
Comments
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| case <OC:Bacteria> | |
| FUNCTION | Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs. |
| end case | |
| SUBUNIT | Part of the 50S ribosomal subunit. |
| case <OG:Chloroplast> | |
| SUBCELLULAR LOCATION | Plastid, chloroplast. |
| end case | |
| SIMILARITY | Belongs to the universal ribosomal protein uL16 family. |
Keywords
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| Ribonucleoprotein | |
| Ribosomal protein | |
| case <OC:Bacteria> | |
| RNA-binding | |
| rRNA-binding | |
| tRNA-binding | |
| end case | |
Gene Ontology
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| case <OCellular component:Bacteria> | |
| GO:0019843; Molecular function:rRNA binding | |
| end case | |
| GO:0006412; Biological process:translation | |
| case <OG:Chloroplast> | |
| GO:0009507; Cellular component:chloroplast | |
| end case | |
Cross-references
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| PROSITE | PS00586; RIBOSOMAL_L16_1; 1; |
| PROSITE | PS00701; RIBOSOMAL_L16_2; 1; |
| Pfam | PF00252; Ribosomal_L16; 1; |
| PRINTS | PR00060; RIBOSOMALL16; 1; |
| NCBIfam | TIGR01164; RplP_bact; 1; |
Features
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Additional information
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| Size range | 133-182 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: None |
| Comments | CARRP is annotated as atypical due to a weak match against profile. |