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HAMAP rule MF_01342

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General rule information [?]

Accession MF_01342
Dates 24-NOV-2005 (Created)
22-SEP-2023 (Last updated, Version 23)
Name Ribosomal_uL16
Scope(s) Bacteria
Plastid
Template(s) Q9RXJ5 (RL16_DEIRA); P0ADY7 (RL16_ECOLI); P60489 (RL16_THET8); [ Recover all ]
Triggered by
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01342 (Get profile general information and statistics)
end case

Propagated annotation [?]

Identifier, protein and gene names [?]

case <OC:Bacteria> and not <OC:Cyanobacteriota>
Identifier RL16
Protein name RecName: Full=Large ribosomal subunit protein uL16;
Gene name Name=rplP;
else case <OC:Cyanobacteriota>
Identifier RL16
Protein name RecName: Full=Large ribosomal subunit protein uL16;
Gene name Name=rplP; Synonyms=rpl16;
else case <OG:Chloroplast>
Identifier RK16
Protein name RecName: Full=Large ribosomal subunit protein uL16c;
Gene name Name=rpl16;
end case

Comments [?]

case <OC:Bacteria>
FUNCTIONBinds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.
end case
SUBUNITPart of the 50S ribosomal subunit.
case <OG:Chloroplast>
SUBCELLULAR LOCATIONPlastid, chloroplast.
end case
SIMILARITYBelongs to the universal ribosomal protein uL16 family.

Keywords [?]


Gene Ontology [?]

case <OCellular component:Bacteria>
GO:0019843; Molecular function:rRNA binding
end case
GO:0006412; Biological process:translation
case <OG:Chloroplast>
GO:0009507; Cellular component:chloroplast
end case

Cross-references [?]

PROSITE PS00586; RIBOSOMAL_L16_1; 1;
PROSITE PS00701; RIBOSOMAL_L16_2; 1;
Pfam PF00252; Ribosomal_L16; 1;
PRINTS PR00060; RIBOSOMALL16; 1;
NCBIfam TIGR01164; RplP_bact; 1;

Features [?]


Additional information [?]

Size range 133-182 amino acids
Related rules None
Fusion Nter: None Cter: None
Comments CARRP is annotated as atypical due to a weak match against profile.



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