HAMAP rule MF_01343
General rule information
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| Accession | MF_01343 |
| Dates | 6-DEC-2005 (Created)
22-SEP-2023 (Last updated, Version 23) |
| Name | Ribosomal_uS15 |
| Scope(s) |
Bacteria Archaea Plastid |
| Template(s) | Q5SJ76 (RS15_THET8); P0ADZ4 (RS15_ECOLI); P05766 (RS15_GEOSE); P80378 (RS15_THETH); [ Recover all ] |
| Triggered by |
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01343_B (Get profile general information and statistics) end case
case c? <OC:Archaea>
HAMAP; MF_01343_A (Get profile general information and statistics) end case
|
Propagated annotation
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Identifier, protein and gene names
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| case <OC:Bacteria> and not <OC:Cyanobacteriota> | |
| Identifier | RS15 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS15; |
| Gene name | Name=rpsO; |
| else case <OC:Cyanobacteriota> | |
| Identifier | RS15 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS15; |
| Gene name | Name=rpsO; Synonyms=rps15; |
| else case <OC:Archaea> | |
| Identifier | RS15 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS15; |
| Gene name | Name=rps15; |
| else case <OG:Chloroplast> | |
| Identifier | RR15 |
| Protein name | RecName: Full=Small ribosomal subunit protein uS15c; |
| Gene name | Name=rps15; |
| end case | |
Comments
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| case <OC:Bacteria> | |
| FUNCTION | One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. |
| FUNCTION | Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. |
| SUBUNIT | Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA. |
| else case <OC:Archaea> | |
| SUBUNIT | Part of the 30S ribosomal subunit. |
| else case <OG:Chloroplast> | |
| SUBUNIT | Part of the 30S ribosomal subunit. |
| SUBCELLULAR LOCATION | Plastid, chloroplast. |
| end case | |
| SIMILARITY | Belongs to the universal ribosomal protein uS15 family. |
Keywords
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| Ribonucleoprotein | |
| Ribosomal protein | |
| case <OC:Bacteria> | |
| RNA-binding | |
| rRNA-binding | |
| end case | |
Gene Ontology
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| case <OCellular component:Bacteria> | |
| GO:0019843; Molecular function:rRNA binding | |
| end case | |
| GO:0006412; Biological process:translation | |
| case <OG:Chloroplast> | |
| GO:0009507; Cellular component:chloroplast | |
| end case | |
Cross-references
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| PROSITE | PS00362; RIBOSOMAL_S15; 1; |
| Pfam | PF00312; Ribosomal_S15; 1; |
| Pfam | PF08069; Ribosomal_S13_N; 1; |
| NCBIfam | TIGR00952; S15_bact; 1; |
Features
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Additional information
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| Size range | 132-170 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: None |
| Comments | Sometimes duplicated in (mostly) monocot plastids. |