HAMAP rule MF_01343
General rule information
[?]
Accession | MF_01343 |
Dates | 6-DEC-2005 (Created) 17-FEB-2023 (Last updated, Version 20) |
Name | Ribosomal_S15 |
Scope | Bacteria
Archaea
Plastid |
Templates | Q5SJ76 (RS15_THET8); P0ADZ4 (RS15_ECOLI); P05766 (RS15_GEOSE); P80378 (RS15_THETH): [Recover all] |
case <OC:Bacteria> or <OG:Chloroplast>
Triggered by |
end case
case <OC:Archaea>
Triggered by |
end case
Propagated annotation
[?]
Identifier, protein and gene names
[?]
case <OC:Bacteria> and not <OC:Cyanobacteriota>
Identifier |
|
Protein name |
|
Gene name |
|
else case <OC:Cyanobacteriota>
Identifier |
|
Protein name |
|
Gene name |
|
else case <OC:Archaea>
Identifier |
|
Protein name |
|
Gene name |
|
else case <OG:Chloroplast>
Identifier |
|
Protein name |
|
Gene name |
|
end case
Comments
[?]
case <OC:Bacteria>
Function | One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. |
Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | |
Subunit | Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA. |
else case <OC:Archaea>
Subunit | Part of the 30S ribosomal subunit. |
else case <OG:Chloroplast>
Subunit | Part of the 30S ribosomal subunit. |
Subcellular location | Plastid, chloroplast. |
end case
Similarity | Belongs to the universal ribosomal protein uS15 family. |
Keywords
[?]
case <OC:Bacteria>
end case
Gene Ontology
[?]
case <OC:Bacteria>
GO:0019843; Molecular function: rRNA binding.
end case
GO:0006412; Biological process: translation.
case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case
Cross-references
[?]
PROSITE | PS00362; RIBOSOMAL_S15; 1; |
Pfam | PF00312; Ribosomal_S15; 1; |
PF08069; Ribosomal_S13_N; 1; | |
TIGRFAMs | TIGR00952; S15_bact; 1; |
Additional information
[?]
case <OC:Bacteria>
Size range | 78-113 amino acids |
end case
case <OC:Archaea>
Size range | 132-170 amino acids |
end case
Related rules | None |
Fusion | None |
Comments | Sometimes duplicated in (mostly) monocot plastids. |