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HAMAP rule MF_01343

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General rule information [?]

Accession MF_01343
Dates 6-DEC-2005 (Created)
22-SEP-2023 (Last updated, Version 23)
Name Ribosomal_uS15
Scope(s) Bacteria
Archaea
Plastid
Template(s) Q5SJ76 (RS15_THET8); P0ADZ4 (RS15_ECOLI); P05766 (RS15_GEOSE); P80378 (RS15_THETH); [ Recover all ]
Triggered by
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01343_B (Get profile general information and statistics)
end case
case c? <OC:Archaea>
HAMAP; MF_01343_A (Get profile general information and statistics)
end case

Propagated annotation [?]

Identifier, protein and gene names [?]

case <OC:Bacteria> and not <OC:Cyanobacteriota>
Identifier RS15
Protein name RecName: Full=Small ribosomal subunit protein uS15;
Gene name Name=rpsO;
else case <OC:Cyanobacteriota>
Identifier RS15
Protein name RecName: Full=Small ribosomal subunit protein uS15;
Gene name Name=rpsO; Synonyms=rps15;
else case <OC:Archaea>
Identifier RS15
Protein name RecName: Full=Small ribosomal subunit protein uS15;
Gene name Name=rps15;
else case <OG:Chloroplast>
Identifier RR15
Protein name RecName: Full=Small ribosomal subunit protein uS15c;
Gene name Name=rps15;
end case

Comments [?]

case <OC:Bacteria>
FUNCTIONOne of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
FUNCTIONForms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
SUBUNITPart of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA.
else case <OC:Archaea>
SUBUNITPart of the 30S ribosomal subunit.
else case <OG:Chloroplast>
SUBUNITPart of the 30S ribosomal subunit.
SUBCELLULAR LOCATIONPlastid, chloroplast.
end case
SIMILARITYBelongs to the universal ribosomal protein uS15 family.

Keywords [?]


Gene Ontology [?]

case <OCellular component:Bacteria>
GO:0019843; Molecular function:rRNA binding
end case
GO:0006412; Biological process:translation
case <OG:Chloroplast>
GO:0009507; Cellular component:chloroplast
end case

Cross-references [?]

PROSITE PS00362; RIBOSOMAL_S15; 1;
Pfam PF00312; Ribosomal_S15; 1;
Pfam PF08069; Ribosomal_S13_N; 1;
NCBIfam TIGR00952; S15_bact; 1;

Features [?]


Additional information [?]

Size range 132-170 amino acids
Related rules None
Fusion Nter: None Cter: None
Comments Sometimes duplicated in (mostly) monocot plastids.



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