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HAMAP rule MF_01365

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General rule information [?]

Accession MF_01365
Dates 6-NOV-2006 (Created)
22-SEP-2023 (Last updated, Version 21)
Name Ribosomal_uL6
Scope(s) Bacteria
Archaea
Plastid
Template(s) P02391 (RL6_GEOSE); P0AG55 (RL6_ECOLI); P0DOY8 (RL6_THET8); Q9RSL3 (RL6_DEIRA); P14135 (RL6_HALMA); [ Recover all ]
Triggered by
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01365_B (Get profile general information and statistics)
end case
case c? <OC:Archaea>
HAMAP; MF_01365_A (Get profile general information and statistics)
end case

Propagated annotation [?]

Identifier, protein and gene names [?]

case <OC:Bacteria> and not <OC:Cyanobacteriota>
Identifier RL6
Protein name RecName: Full=Large ribosomal subunit protein uL6;
Gene name Name=rplF;
else case <OC:Cyanobacteriota>
Identifier RL6
Protein name RecName: Full=Large ribosomal subunit protein uL6;
Gene name Name=rplF; Synonyms=rpl6;
else case <OC:Archaea>
Identifier RL6
Protein name RecName: Full=Large ribosomal subunit protein uL6;
Gene name Name=rpl6;
else case <OG:Chloroplast>
Identifier RK6
Protein name RecName: Full=Large ribosomal subunit protein uL6c;
Gene name Name=rpl6;
end case

Comments [?]

case not <OG:Chloroplast>
FUNCTIONThis protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
SUBUNITPart of the 50S ribosomal subunit.
else
FUNCTIONBinds 23S rRNA.
SUBUNITPart of the 50S ribosomal subunit.
SUBCELLULAR LOCATIONPlastid, chloroplast.
end case
SIMILARITYBelongs to the universal ribosomal protein uL6 family.

Keywords [?]


Gene Ontology [?]

GO:0019843; Molecular function:rRNA binding
GO:0006412; Biological process:translation
case <OG:Chloroplast>
GO:0009507; Cellular component:chloroplast
end case

Cross-references [?]

PROSITE PS00525; RIBOSOMAL_L6_1; 1;
PROSITE PS00700; RIBOSOMAL_L6_2; 1;
Pfam PF00347; Ribosomal_L6; 2;
PRINTS PR00059; RIBOSOMALL6; 1;
NCBIfam TIGR03654; L6_bact; 1;
NCBIfam TIGR03653; arch_L6P; 1;

Features [?]

From: RL6_ECOLI (P0AG55)
Key From To Description Tag Condition FTGroup
case <OC:Escherichia> or <OC:Shigella>
MOD_RES 44 44 /note="N6-acetyllysine" K
end case

Additional information [?]

Size range 170-220 amino acids
Related rules None
Fusion Nter: None Cter: None



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