HAMAP rule MF_01365
General rule information
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| Accession | MF_01365 |
| Dates | 6-NOV-2006 (Created)
1-JUN-2023 (Last updated, Version 20) |
| Name | Ribosomal_L6 |
| Scope(s) |
Bacteria Archaea Plastid |
| Template(s) | P02391 (RL6_GEOSE); P0AG55 (RL6_ECOLI); P0DOY8 (RL6_THET8); Q9RSL3 (RL6_DEIRA); P14135 (RL6_HALMA); [ Recover all ] |
| Triggered by |
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01365_B (Get profile general information and statistics) end case
case c? <OC:Archaea>
HAMAP; MF_01365_A (Get profile general information and statistics) end case
|
Propagated annotation
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Identifier, protein and gene names
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| case <OC:Bacteria> and not <OC:Cyanobacteriota> | |
| Identifier | RL6 |
| Protein name | RecName: Full=Large ribosomal subunit protein uL6; |
| Gene name | Name=rplF; |
| else case <OC:Cyanobacteriota> | |
| Identifier | RL6 |
| Protein name | RecName: Full=Large ribosomal subunit protein uL6; |
| Gene name | Name=rplF; Synonyms=rpl6; |
| else case <OC:Archaea> | |
| Identifier | RL6 |
| Protein name | RecName: Full=Large ribosomal subunit protein uL6; |
| Gene name | Name=rpl6; |
| else case <OG:Chloroplast> | |
| Identifier | RK6 |
| Protein name | RecName: Full=Large ribosomal subunit protein uL6c; |
| Gene name | Name=rpl6; |
| end case | |
Comments
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| case not <OG:Chloroplast> | |
| FUNCTION | This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center. |
| SUBUNIT | Part of the 50S ribosomal subunit. |
| else | |
| FUNCTION | Binds 23S rRNA. |
| SUBUNIT | Part of the 50S ribosomal subunit. |
| SUBCELLULAR LOCATION | Plastid, chloroplast. |
| end case | |
| SIMILARITY | Belongs to the universal ribosomal protein uL6 family. |
Keywords
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| case <FT:1> | |
| Acetylation | |
| end case | |
| Ribonucleoprotein | |
| Ribosomal protein | |
| RNA-binding | |
| rRNA-binding | |
Gene Ontology
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| GO:0019843; Molecular function:rRNA binding | |
| GO:0006412; Biological process:translation | |
| case <OG:Chloroplast> | |
| GO:0009507; Cellular component:chloroplast | |
| end case | |
Cross-references
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| PROSITE | PS00525; RIBOSOMAL_L6_1; 1; |
| PROSITE | PS00700; RIBOSOMAL_L6_2; 1; |
| Pfam | PF00347; Ribosomal_L6; 2; |
| PRINTS | PR00059; RIBOSOMALL6; 1; |
| NCBIfam | TIGR03654; L6_bact; 1; |
| NCBIfam | TIGR03653; arch_L6P; 1; |
Features
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| From: RL6_ECOLI (P0AG55) | ||||||||||||
| Key | From | To | Description | Tag | Condition | FTGroup | ||||||
| case <OC:Escherichia> or <OC:Shigella> | ||||||||||||
| MOD_RES | 44 | 44 | /note="N6-acetyllysine" | K | ||||||||
| end case | ||||||||||||
Additional information
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| Size range | 170-220 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: None |