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HAMAP rule MF_01365
General rule information
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Accession | MF_01365 |
Dates | 6-NOV-2006 (Created)
22-SEP-2023 (Last updated, Version 21) |
Name | Ribosomal_uL6 |
Scope(s) |
Bacteria Archaea Plastid |
Template(s) | P02391 (RL6_GEOSE); P0AG55 (RL6_ECOLI); P0DOY8 (RL6_THET8); Q9RSL3 (RL6_DEIRA); P14135 (RL6_HALMA); [ Recover all ] |
Triggered by |
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01365_B (Get profile general information and statistics) end case
case c? <OC:Archaea>
HAMAP; MF_01365_A (Get profile general information and statistics) end case
|
Propagated annotation
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Identifier, protein and gene names
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case <OC:Bacteria> and not <OC:Cyanobacteriota> | |
Identifier | RL6 |
Protein name | RecName: Full=Large ribosomal subunit protein uL6; |
Gene name | Name=rplF; |
else case <OC:Cyanobacteriota> | |
Identifier | RL6 |
Protein name | RecName: Full=Large ribosomal subunit protein uL6; |
Gene name | Name=rplF; Synonyms=rpl6; |
else case <OC:Archaea> | |
Identifier | RL6 |
Protein name | RecName: Full=Large ribosomal subunit protein uL6; |
Gene name | Name=rpl6; |
else case <OG:Chloroplast> | |
Identifier | RK6 |
Protein name | RecName: Full=Large ribosomal subunit protein uL6c; |
Gene name | Name=rpl6; |
end case |
Comments
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case not <OG:Chloroplast> | |
FUNCTION | This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center. |
SUBUNIT | Part of the 50S ribosomal subunit. |
else | |
FUNCTION | Binds 23S rRNA. |
SUBUNIT | Part of the 50S ribosomal subunit. |
SUBCELLULAR LOCATION | Plastid, chloroplast. |
end case | |
SIMILARITY | Belongs to the universal ribosomal protein uL6 family. |
Keywords
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case <FT:1> | |
Acetylation | |
end case | |
Ribonucleoprotein | |
Ribosomal protein | |
RNA-binding | |
rRNA-binding |
Gene Ontology
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GO:0019843; Molecular function:rRNA binding | |
GO:0006412; Biological process:translation | |
case <OG:Chloroplast> | |
GO:0009507; Cellular component:chloroplast | |
end case |
Cross-references
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PROSITE | PS00525; RIBOSOMAL_L6_1; 1; |
PROSITE | PS00700; RIBOSOMAL_L6_2; 1; |
Pfam | PF00347; Ribosomal_L6; 2; |
PRINTS | PR00059; RIBOSOMALL6; 1; |
NCBIfam | TIGR03654; L6_bact; 1; |
NCBIfam | TIGR03653; arch_L6P; 1; |
Features
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From: RL6_ECOLI (P0AG55) | ||||||||||||
Key | From | To | Description | Tag | Condition | FTGroup | ||||||
case <OC:Escherichia> or <OC:Shigella> | ||||||||||||
MOD_RES | 44 | 44 | /note="N6-acetyllysine" | K | ||||||||
end case |
Additional information
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Size range | 170-220 amino acids |
Related rules |
None |
Fusion | Nter: None Cter: None |