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Annotation rule MF_01365
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General rule information [?]

Accession MF_01365
Dates 6-NOV-2006 (Created)
19-NOV-2019 (Last updated, Version 17)
Name Ribosomal_L6
Scope
Bacteria
Archaea
Plastid
Templates P02391 (RL6_GEOSE); P0AG55 (RL6_ECOLI); P0DOY8 (RL6_THET8); Q9RSL3 (RL6_DEIRA); P14135 (RL6_HALMA): [Recover all]
case <OC:Bacteria> or <OG:Chloroplast>
Triggered by
end case

case <OC:Archaea>
Triggered by
end case


Propagated annotation [?]


Identifier, protein and gene names [?]

case <OC:Bacteria> and not <OC:Cyanobacteria>
Identifier
RL6
Protein name
RecName: Full=50S ribosomal protein L6;
Gene name
rplF
else case <OC:Cyanobacteria>
Identifier
RL6
Protein name
RecName: Full=50S ribosomal protein L6;
Gene name
rplF, rpl6
else case <OC:Archaea>
Identifier
RL6
Protein name
RecName: Full=50S ribosomal protein L6;
Gene name
rpl6
else case <OG:Chloroplast>
Identifier
RK6
Protein name
RecName: Full=50S ribosomal protein L6, chloroplastic;
Gene name
rpl6
end case

Comments [?]

case not <OG:Chloroplast>
Function This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
Subunit Part of the 50S ribosomal subunit.
else
Function Binds 23S rRNA.
Subunit Part of the 50S ribosomal subunit.
Subcellular location Plastid, chloroplast.
end case
Similarity Belongs to the universal ribosomal protein uL6 family.

Keywords [?]

case <FT:1>
Acetylation
end case
Ribonucleoprotein
Ribosomal protein
RNA-binding
rRNA-binding

Gene Ontology [?]

GO:0019843; Molecular function: rRNA binding.
GO:0006412; Biological process: translation.
case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case

Cross-references [?]

case <OC:Bacteria> or <OG:Chloroplast>
PROSITE PS00525; RIBOSOMAL_L6_1; 1;
end case
case <OC:Archaea>
PROSITE PS00700; RIBOSOMAL_L6_2; 1;
end case
Pfam PF00347; Ribosomal_L6; 2;
PRINTS PR00059; RIBOSOMALL6; 1;
TIGRFAMs TIGR03654; L6_bact; 1;
TIGR03653; arch_L6P; 1;

Features [?]

case <OC:Escherichia> or <OC:Shigella>
From: RL6_ECOLI (P0AG55)
Key     From     To       Description   Tag   Condition   FTGroup
MOD_RES     44     44       N6-acetyllysine     K  
end case

Additional information [?]

case <OC:Bacteria>
Size range 162-203 amino acids
end case
case <OC:Archaea>
Size range 170-220 amino acids
end case
Related rules None
Fusion None


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