HAMAP rule MF_01369
General rule information
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Accession | MF_01369 |
Dates | 19-DEC-2006 (Created)
22-SEP-2023 (Last updated, Version 19) |
Name | Ribosomal_uL23 |
Scope(s) |
Bacteria Archaea Plastid |
Template(s) | Q9RXK0 (RL23_DEIRA); P0ADZ0 (RL23_ECOLI); Q5SHP0 (RL23_THET8); P12732 (RL23_HALMA); [ Recover all ] |
Triggered by |
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01369_B (Get profile general information and statistics) end case
case c? <OC:Archaea>
HAMAP; MF_01369_A (Get profile general information and statistics) end case
|
Propagated annotation
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Identifier, protein and gene names
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case <OC:Bacteria> and not <OC:Cyanobacteriota> | |
Identifier | RL23 |
Protein name | RecName: Full=Large ribosomal subunit protein uL23; |
Gene name | Name=rplW; |
else case <OC:Cyanobacteriota> | |
Identifier | RL23 |
Protein name | RecName: Full=Large ribosomal subunit protein uL23; |
Gene name | Name=rplW; Synonyms=rpl23; |
else case <OC:Archaea> | |
Identifier | RL23 |
Protein name | RecName: Full=Large ribosomal subunit protein uL23; |
Gene name | Name=rpl23; |
else case <OG:Chloroplast> | |
Identifier | RK23 |
Protein name | RecName: Full=Large ribosomal subunit protein uL23c; |
Gene name | Name=rpl23; |
end case |
Comments
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case <OC:Bacteria> | |
FUNCTION | One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome. |
SUBUNIT | Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome. |
else case <OC:Archaea> | |
FUNCTION | Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. |
SUBUNIT | Part of the 50S ribosomal subunit. Contacts protein L29. |
else case <OG:Chloroplast> | |
FUNCTION | Binds to 23S rRNA. |
SUBUNIT | Part of the 50S ribosomal subunit. |
SUBCELLULAR LOCATION | Plastid, chloroplast. |
end case | |
SIMILARITY | Belongs to the universal ribosomal protein uL23 family. |
Keywords
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Gene Ontology
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GO:0006412; Biological process:translation | |
GO:0019843; Molecular function:rRNA binding | |
case <OG:Chloroplast> | |
GO:0009507; Cellular component:chloroplast | |
end case |
Cross-references
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PROSITE | PS00050; RIBOSOMAL_L23; 1; |
Pfam | PF00276; Ribosomal_L23; 1; |
NCBIfam | TIGR03636; uL23_arch; 0-1; |
Features
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Additional information
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Size range | 78-95 amino acids |
Related rules |
None |
Fusion | Nter: None Cter: <Unknown> |
Comments | Some of the Mycoplasma are fused with unknown domains. Usually encoded in plastid genomes, in spinach the bacterial ortholog has been replaced by the 80S cytosolic ortholog. The plastid-encoded gene is a pseudogene in the Caryophyllales and in EPIVI. |