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HAMAP rule MF_01369

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General rule information [?]

Accession MF_01369
Dates 19-DEC-2006 (Created)
22-SEP-2023 (Last updated, Version 19)
Name Ribosomal_uL23
Scope(s) Bacteria
Archaea
Plastid
Template(s) Q9RXK0 (RL23_DEIRA); P0ADZ0 (RL23_ECOLI); Q5SHP0 (RL23_THET8); P12732 (RL23_HALMA); [ Recover all ]
Triggered by
case c? <OC:Bacteria> or <OG:Chloroplast>
HAMAP; MF_01369_B (Get profile general information and statistics)
end case
case c? <OC:Archaea>
HAMAP; MF_01369_A (Get profile general information and statistics)
end case

Propagated annotation [?]

Identifier, protein and gene names [?]

case <OC:Bacteria> and not <OC:Cyanobacteriota>
Identifier RL23
Protein name RecName: Full=Large ribosomal subunit protein uL23;
Gene name Name=rplW;
else case <OC:Cyanobacteriota>
Identifier RL23
Protein name RecName: Full=Large ribosomal subunit protein uL23;
Gene name Name=rplW; Synonyms=rpl23;
else case <OC:Archaea>
Identifier RL23
Protein name RecName: Full=Large ribosomal subunit protein uL23;
Gene name Name=rpl23;
else case <OG:Chloroplast>
Identifier RK23
Protein name RecName: Full=Large ribosomal subunit protein uL23c;
Gene name Name=rpl23;
end case

Comments [?]

case <OC:Bacteria>
FUNCTIONOne of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.
SUBUNITPart of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.
else case <OC:Archaea>
FUNCTIONBinds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome.
SUBUNITPart of the 50S ribosomal subunit. Contacts protein L29.
else case <OG:Chloroplast>
FUNCTIONBinds to 23S rRNA.
SUBUNITPart of the 50S ribosomal subunit.
SUBCELLULAR LOCATIONPlastid, chloroplast.
end case
SIMILARITYBelongs to the universal ribosomal protein uL23 family.

Keywords [?]


Gene Ontology [?]

GO:0006412; Biological process:translation
GO:0019843; Molecular function:rRNA binding
case <OG:Chloroplast>
GO:0009507; Cellular component:chloroplast
end case

Cross-references [?]

PROSITE PS00050; RIBOSOMAL_L23; 1;
Pfam PF00276; Ribosomal_L23; 1;
NCBIfam TIGR03636; uL23_arch; 0-1;

Features [?]


Additional information [?]

Size range 78-95 amino acids
Related rules None
Fusion Nter: None Cter: <Unknown>
Comments Some of the Mycoplasma are fused with unknown domains. Usually encoded in plastid genomes, in spinach the bacterial ortholog has been replaced by the 80S cytosolic ortholog. The plastid-encoded gene is a pseudogene in the Caryophyllales and in EPIVI.



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