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HAMAP rule MF_01458
General rule information
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Accession | MF_01458 |
Dates | 13-SEP-2010 (Created)
1-JUN-2023 (Last updated, Version 14) |
Name | FtsH |
Scope(s) |
Bacteria Plastid |
Template(s) | P0AAI3 (FTSH_ECOLI); O67077 (FTSH_AQUAE); Q9WZ49 (FTSH_THEMA); Q5SI82 (FTSH_THET8); Q55700 (FTSH2_SYNY3); [ Recover all ] |
Triggered by |
HAMAP; MF_01458 (Get profile general information and statistics) |
Propagated annotation
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Identifier, protein and gene names
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Identifier | FTSH |
Protein name | RecName: Full=ATP-dependent zinc metalloprotease FtsH; EC=3.4.24.-; |
Gene name | Name=ftsH; |
Comments
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case <OG:Chloroplast> | |
FUNCTION | Acts as a processive, ATP-dependent zinc metallopeptidase. |
else | |
FUNCTION | Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins. |
end case | |
case <FTGroup:1> | |
COFACTOR | Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Note=Binds 1 zinc ion per subunit.; |
end case | |
SUBUNIT | Homohexamer. |
case <OG:Chloroplast> | |
SUBCELLULAR LOCATION | Plastid, chloroplast thylakoid membrane; Multi- pass membrane protein; Stromal side. |
else case <OC:Cyanobacteriota> and not <OC:Gloeobacter> | |
SUBCELLULAR LOCATION | Cellular thylakoid membrane; Multi-pass membrane protein; Stromal side. |
else case (defined <Property:Membrane> and <Property:Membrane=2>) or <OC:Gloeobacter> | |
SUBCELLULAR LOCATION | Cell inner membrane; Multi-pass membrane protein; Cytoplasmic side. |
else case not defined <Property:Membrane> or <Property:Membrane=1> | |
SUBCELLULAR LOCATION | Cell membrane; Multi-pass membrane protein; Cytoplasmic side. |
end case | |
SIMILARITY | In the central section; belongs to the AAA ATPase family. |
SIMILARITY | In the C-terminal section; belongs to the peptidase M41 family. |
Keywords
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ATP-binding | |
case <OG:Chloroplast> or <OC:Cyanobacteriota> and not <OC:Gloeobacter> | |
Thylakoid | |
else case (defined <Property:Membrane> and <Property:Membrane=2>) or <OC:Gloeobacter> | |
Cell inner membrane | |
Cell membrane | |
else case not defined <Property:Membrane> or <Property:Membrane=1> | |
Cell membrane | |
end case | |
Hydrolase | |
Membrane | |
Metal-binding | |
Metalloprotease | |
Nucleotide-binding | |
Protease | |
Transmembrane | |
Transmembrane helix | |
Zinc |
Gene Ontology
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GO:0005524; Molecular function:ATP binding | |
GO:0016887; Molecular function:ATP hydrolysis activity | |
GO:0008233; Molecular function:peptidase activity | |
GO:0030163; Biological process:protein catabolic process | |
case <FTGroup:1> | |
GO:0008270; Molecular function:zinc ion binding | |
end case | |
case <OG:Chloroplast> | |
GO:0009535; Cellular component:chloroplast thylakoid membrane | |
else case <OCellular component:Cyanobacteriota> and not <OC:Gloeobacter> | |
GO:0042651; Cellular component:thylakoid membrane | |
else; https://www.ebi.ac.uk/QuickGO/term/else | |
GO:0005886; Cellular component:plasma membrane | |
end case |
Cross-references
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PROSITE | PS00674; AAA; 1; |
Pfam | PF00004; AAA; 1; |
Pfam | PF06480; FtsH_ext; 1; |
Pfam | PF01434; Peptidase_M41; 1; |
NCBIfam | TIGR01241; FtsH_fam; 1; |
General | Transmembrane; -; 2; |
ADD_TOPO_DOMAIN | Cytoplasmic; -; 2; |
ADD_TOPO_DOMAIN | Lumenal; -; 1; |
ADD_TOPO_DOMAIN | Stromal; -; 2; |
ADD_TOPO_DOMAIN | Lumenal; -; 1; |
ADD_TOPO_DOMAIN | Cytoplasmic; -; 2; |
ADD_TOPO_DOMAIN | Periplasmic; -; 1; |
ADD_TOPO_DOMAIN | Cytoplasmic; -; 2; |
ADD_TOPO_DOMAIN | Extracellular; -; 1; |
Features
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From: FTSH_AQUAE (O67077) | ||||||||||||
Key | From | To | Description | Tag | Condition | FTGroup | ||||||
BINDING | 195 | 202 | /ligand="ATP" /ligand_id="ChEBI:CHEBI:30616" |
G-x-[PT]-G-[TVS]-G-K-T | ||||||||
ACT_SITE | 419 | 419 | E | |||||||||
BINDING | 418 | 418 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_note="catalytic" |
H | 1 | |||||||
BINDING | 422 | 422 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_note="catalytic" |
H | 1 | |||||||
BINDING | 496 | 496 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_note="catalytic" |
D | 1 |
Additional information
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Size range | 510-854 amino acids |
Related rules |
None |
Fusion | Nter: <Unknown> Cter: None |
Comments | Chlamydiota have an N-terminal extension not found in other organisms. Not all proteins have 2 transmembrane domains. There are short paralogs in Haemophilus that are missing the N-terminal transmembrane section, they are annotated as atypical. Some plastids encode very long homologs that cannot bind zinc, they are annotated as atypical (CHLVU, HELSJ, OLTVI). |