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HAMAP rule MF_01458

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General rule information [?]

Accession MF_01458
Dates 13-SEP-2010 (Created)
1-JUN-2023 (Last updated, Version 14)
Name FtsH
Scope(s) Bacteria
Plastid
Template(s) P0AAI3 (FTSH_ECOLI); O67077 (FTSH_AQUAE); Q9WZ49 (FTSH_THEMA); Q5SI82 (FTSH_THET8); Q55700 (FTSH2_SYNY3); [ Recover all ]
Triggered by HAMAP; MF_01458 (Get profile general information and statistics)

Propagated annotation [?]

Identifier, protein and gene names [?]

Identifier FTSH
Protein name RecName: Full=ATP-dependent zinc metalloprotease FtsH;
                 EC=3.4.24.-;
Gene name Name=ftsH;

Comments [?]

case <OG:Chloroplast>
FUNCTIONActs as a processive, ATP-dependent zinc metallopeptidase.
else
FUNCTIONActs as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.
end case
case <FTGroup:1>
COFACTOR Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Note=Binds 1 zinc ion per subunit.;
end case
SUBUNITHomohexamer.
case <OG:Chloroplast>
SUBCELLULAR LOCATIONPlastid, chloroplast thylakoid membrane; Multi- pass membrane protein; Stromal side.
else case <OC:Cyanobacteriota> and not <OC:Gloeobacter>
SUBCELLULAR LOCATIONCellular thylakoid membrane; Multi-pass membrane protein; Stromal side.
else case (defined <Property:Membrane> and <Property:Membrane=2>) or <OC:Gloeobacter>
SUBCELLULAR LOCATIONCell inner membrane; Multi-pass membrane protein; Cytoplasmic side.
else case not defined <Property:Membrane> or <Property:Membrane=1>
SUBCELLULAR LOCATIONCell membrane; Multi-pass membrane protein; Cytoplasmic side.
end case
SIMILARITYIn the central section; belongs to the AAA ATPase family.
SIMILARITYIn the C-terminal section; belongs to the peptidase M41 family.

Keywords [?]

ATP-binding
case <OG:Chloroplast> or <OC:Cyanobacteriota> and not <OC:Gloeobacter>
Thylakoid
else case (defined <Property:Membrane> and <Property:Membrane=2>) or <OC:Gloeobacter>
Cell inner membrane
Cell membrane
else case not defined <Property:Membrane> or <Property:Membrane=1>
Cell membrane
end case
Hydrolase
Membrane
Metal-binding
Metalloprotease
Nucleotide-binding
Protease
Transmembrane
Transmembrane helix
Zinc

Gene Ontology [?]

GO:0005524; Molecular function:ATP binding
GO:0016887; Molecular function:ATP hydrolysis activity
GO:0008233; Molecular function:peptidase activity
GO:0030163; Biological process:protein catabolic process
case <FTGroup:1>
GO:0008270; Molecular function:zinc ion binding
end case
case <OG:Chloroplast>
GO:0009535; Cellular component:chloroplast thylakoid membrane
else case <OCellular component:Cyanobacteriota> and not <OC:Gloeobacter>
GO:0042651; Cellular component:thylakoid membrane
else; https://www.ebi.ac.uk/QuickGO/term/else
GO:0005886; Cellular component:plasma membrane
end case

Cross-references [?]

PROSITE PS00674; AAA; 1;
Pfam PF00004; AAA; 1;
Pfam PF06480; FtsH_ext; 1;
Pfam PF01434; Peptidase_M41; 1;
NCBIfam TIGR01241; FtsH_fam; 1;
General Transmembrane; -; 2;
ADD_TOPO_DOMAIN Cytoplasmic; -; 2;
ADD_TOPO_DOMAIN Lumenal; -; 1;
ADD_TOPO_DOMAIN Stromal; -; 2;
ADD_TOPO_DOMAIN Lumenal; -; 1;
ADD_TOPO_DOMAIN Cytoplasmic; -; 2;
ADD_TOPO_DOMAIN Periplasmic; -; 1;
ADD_TOPO_DOMAIN Cytoplasmic; -; 2;
ADD_TOPO_DOMAIN Extracellular; -; 1;

Features [?]

From: FTSH_AQUAE (O67077)
Key From To Description Tag Condition FTGroup
BINDING 195 202 /ligand="ATP"
/ligand_id="ChEBI:CHEBI:30616"
G-x-[PT]-G-[TVS]-G-K-T
ACT_SITE 419 419 E
BINDING 418 418 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_note="catalytic"
H 1
BINDING 422 422 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_note="catalytic"
H 1
BINDING 496 496 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_note="catalytic"
D 1

Additional information [?]

Size range 510-854 amino acids
Related rules None
Fusion Nter: <Unknown> Cter: None
Comments Chlamydiota have an N-terminal extension not found in other organisms. Not all proteins have 2 transmembrane domains. There are short paralogs in Haemophilus that are missing the N-terminal transmembrane section, they are annotated as atypical. Some plastids encode very long homologs that cannot bind zinc, they are annotated as atypical (CHLVU, HELSJ, OLTVI).



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