HAMAP rule MF_01590
General rule information
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| PURL | https://purl.expasy.org/hamap/rule/MF_01590 |
| Accession | MF_01590 |
| Dates | 22-NOV-2007 (Created)
03-SEP-2024 (Last updated, Version 17) |
| Name | tRNA_carboxymethyltr_CmoB |
| Scope(s) |
Bacteria Oscillatoriales Pseudomonadota |
| Template(s) | P76291; Q8ZNV1; [ Recover all ] |
| Triggered by |
HAMAP; MF_01590 (Get profile general information and statistics) |
Propagated annotation
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Identifier, protein and gene names
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| Identifier | CMOB |
| Protein name | RecName: Full=tRNA U34 carboxymethyltransferase; EC=2.5.1.-; |
| Gene name | Name=cmoB; |
Comments
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| FUNCTION | Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. |
| CATALYTIC ACTIVITY | Reaction=carboxy-S-adenosyl-L-methionine + 5-hydroxyuridine(34) in tRNA = 5-carboxymethoxyuridine(34) in tRNA + S-adenosyl-L-homocysteine + H(+); Xref=Rhea:RHEA:52848, Rhea:RHEA-COMP:13381, Rhea:RHEA- COMP:13383, ChEBI:CHEBI:15378, ChEBI:CHEBI:57856, ChEBI:CHEBI:134278, ChEBI:CHEBI:136877, ChEBI:CHEBI:136879; |
| case <OC:Pseudomonadota> | |
| SUBUNIT | Homotetramer. |
| end case | |
| SIMILARITY | Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoB family. |
Keywords
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Gene Ontology
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| GO:0016765; Molecular function:transferase activity, transferring alkyl or aryl (other than methyl) groups |
| GO:0006400; Biological process:tRNA modification |
Cross-references
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Features
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| From: CMOB_ECOLI (P76291) | ||||||||||||
| Key | From | To | Description | Tag | Condition | FTGroup | ||||||
| BINDING | 152 | 154 | /ligand="carboxy-S-adenosyl-L-methionine" /ligand_id="ChEBI:CHEBI:134278" |
[DE]-P-[TS] | ||||||||
| BINDING | 181 | 182 | /ligand="carboxy-S-adenosyl-L-methionine" /ligand_id="ChEBI:CHEBI:134278" |
[IVLM]-[ED] | ||||||||
| BINDING | 91 | 91 | /ligand="carboxy-S-adenosyl-L-methionine" /ligand_id="ChEBI:CHEBI:134278" |
K | ||||||||
| BINDING | 105 | 105 | /ligand="carboxy-S-adenosyl-L-methionine" /ligand_id="ChEBI:CHEBI:134278" |
W | ||||||||
| BINDING | 110 | 110 | /ligand="carboxy-S-adenosyl-L-methionine" /ligand_id="ChEBI:CHEBI:134278" |
K | ||||||||
| BINDING | 130 | 130 | /ligand="carboxy-S-adenosyl-L-methionine" /ligand_id="ChEBI:CHEBI:134278" |
G | ||||||||
| BINDING | 196 | 196 | /ligand="carboxy-S-adenosyl-L-methionine" /ligand_id="ChEBI:CHEBI:134278" |
M | ||||||||
| BINDING | 200 | 200 | /ligand="carboxy-S-adenosyl-L-methionine" /ligand_id="ChEBI:CHEBI:134278" |
Y | ||||||||
| BINDING | 315 | 315 | /ligand="carboxy-S-adenosyl-L-methionine" /ligand_id="ChEBI:CHEBI:134278" |
R | ||||||||
Additional information
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| Size range | 261-363 amino acids |
| Related rules |
None |
| Fusion | Nter: None Cter: None |