HAMAP rule MF_00107
General rule information
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Accession | MF_00107 |
Dates | 1-JUN-2001 (Created) 19-NOV-2022 (Last updated, Version 39) |
Name | IspF |
Scope | Bacteria |
Templates | P62617 (ISPF_ECOLI); P44815 (ISPF_HAEIN); Q8RQP5 (ISPF_THET8); P9WKG5 (ISPF_MYCTU); Q63T71 (ISPF_BURPS); Q3JRA0 (ISPF_BURP1); Q06756 (ISPF_BACSU); Q5NFU1 (ISPF_FRATT); Q8ZMF7 (ISPF_SALTY); Q8EBR3 (ISPF_SHEON); Q8ZBP7 (ISPF_YERPE): [Recover all] |
Triggered by |
Propagated annotation
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Identifier, protein and gene names
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Identifier |
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Protein name |
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Gene name |
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Comments
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Function | Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). |
Catalytic activity | RHEA:23864: 4-CDP-2-C-methyl-D-erythritol 2-phosphate = 2-C-methyl-D-erythritol 2,4-cyclic diphosphate + CMP
EC 4.6.1.12 |
Cofactor | a divalent metal cation Note: Binds 1 divalent metal cation per subunit. |
Pathway | Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 4/6. |
Subunit | Homotrimer. |
Similarity | Belongs to the IspF family. |
Keywords
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Gene Ontology
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GO:0008685; Molecular function: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity.
GO:0016114; Biological process: terpenoid biosynthetic process.
GO:0016114; Biological process: terpenoid biosynthetic process.
Cross-references
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Features
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From: ISPF_ECOLI (P62617) | ||||||||||||
Key | From | To | Description | Tag | Condition | FTGroup | ||||||
BINDING | 8 | 10 | /ligand="4-CDP-2-C-methyl-D-erythritol 2-phosphate" /ligand_id="ChEBI:CHEBI:57919 | D-x-H | ||||||||
BINDING | 34 | 35 | /ligand="4-CDP-2-C-methyl-D-erythritol 2-phosphate" /ligand_id="ChEBI:CHEBI:57919 | H-S | ||||||||
BINDING | 56 | 58 | /ligand="4-CDP-2-C-methyl-D-erythritol 2-phosphate" /ligand_id="ChEBI:CHEBI:57919 | [DNEK]-[IVL]-[GA] | ||||||||
BINDING | 61 | 65 | /ligand="4-CDP-2-C-methyl-D-erythritol 2-phosphate" /ligand_id="ChEBI:CHEBI:57919 | F-x-[DNEQ]-x-[DNEQ] | ||||||||
BINDING | 100 | 106 | /ligand="4-CDP-2-C-methyl-D-erythritol 2-phosphate" /ligand_id="ChEBI:CHEBI:57919 | [ALVI]-x(2)-P-[KNR]-M-[LAGI] | ||||||||
BINDING | 132 | 135 | /ligand="4-CDP-2-C-methyl-D-erythritol 2-phosphate" /ligand_id="ChEBI:CHEBI:57919 | [TS]-[TS]-x-[EDN] | ||||||||
BINDING | 8 | 8 | /ligand="a divalent metal cation" /ligand_id="ChEBI:CHEBI:60240 | D | ||||||||
BINDING | 10 | 10 | /ligand="a divalent metal cation" /ligand_id="ChEBI:CHEBI:60240 | H | ||||||||
BINDING | 42 | 42 | /ligand="a divalent metal cation" /ligand_id="ChEBI:CHEBI:60240 | H | ||||||||
BINDING | 139 | 139 | /ligand="4-CDP-2-C-methyl-D-erythritol 2-phosphate" /ligand_id="ChEBI:CHEBI:57919 | F | ||||||||
BINDING | 142 | 142 | /ligand="4-CDP-2-C-methyl-D-erythritol 2-phosphate" /ligand_id="ChEBI:CHEBI:57919 | [RHK] | ||||||||
SITE | 34 | 34 | Transition state stabilizer | [HDN] | ||||||||
SITE | 133 | 133 | Transition state stabilizer | [TS] |
Additional information
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Size range | 152-184 amino acids |
Related rules | MF_01520 (ISPDF supersedes the current rule) |
Fusion | None |
Comments | See MF_01520 for bifunctional ispDF |